Scientific Publications

Duarte, I.A., Fick, J., Cabral, H.N. and Fonseca, V.F., 2022. Bioconcentration of neuroactive pharmaceuticals in fish: Relation to lipophilicity, experimental design and toxicity in the aquatic environment. Science of the Total Environment 812, 152543 (DOI: 10.1016/j.scitotenv.2021.152543).

Duarte, B., Feijão, E., Pinto, M.V., Matos, A.R., Silva, A.R., Figueiredo, A., Fonseca, V.F., Reis-Santos, P. and Caçador, I., 2022. Nutritional valuation and food safety of endemic Mediterranean halophytes species cultivated in abandoned salt pans under a natural irrigation scheme. Estuarine Coastal and Shelf Science 265, 107733 (DOI: 10.1016/j.ecss.2021.107733). 

Roma, J., Feijão, E., Vinagre, C., Duarte, B. and Matos, A.R., 2022. Impacts of dissolved Zn and nanoparticle forms in the fatty acid landscape of Mytilus galloprovincialis. Science of the Total Environment.

Nunes, D., André, R., Ressaissi, A., Duarte, B., Melo, R., and Serralheiro, M.L., 2022. Influence of gender and age of brown seaweed (Fucus vesiculosus) on biochemical activities of its aqueous extracts. Foods 11, 39 (DOI: 10.3390/foods11010039).

Fonseca, V.F., Duarte, I.A., Matos, A.R., Reis-Santos, P. and Duarte, B., 2022. Fatty acid profiles as natural tracers of provenance and lipid quality indicators in illegally sourced fish and bivalves. Food Control 134, 108735 (DOI: 10.1016/j.foodcont.2021.108735).

Jueterbock, A., Duarte, B., Coyer, J., Olsen, J.L., Kopp, M.E.L., Smolina, I., Arnaud-Hond, S., Hu, Z.-M. and Hoarau, G., 2022. Adaptation of temperate seagrass to Arctic light relies on seasonal acclimatization of carbon capture and metabolism. Frontiers in Plant Science 12, 745855 (DOI: 10.3389/fpls.2021.745855). 

Duarte, B., Duarte, I.A., Caçador, I., Reis-Santos, P., Vasconcelos, R.P., Gameiro, C., Tanner, S.E. and Fonseca, V.F., 2022. Elemental fingerprinting of thornback ray (Raja clavata) muscle tissue as a tracer for provenance and food safety assessment. Food Control 133, 108592 (DOI: 10.1016/j.foodcont.2021.108592).

Concepcion II, R., Dadios, E., Cuello, J. and Duarte, B., 2022. Thermo-Gas Dynamics Affect the Leaf Canopy Shape and Moisture Content of Aquaponic Lettuce in a Modified Partially Diffused Microclimatic Chamber. Scientia Horticulturae 292, 110649 (DOI: 10.1016/j.scienta.2021.110649).

Duarte, B., Carreiras, J., Feijão, E., Carvalho, R.C., Matos, A.R., Fonseca, V.F., Novais, S.C. and Lemos, M.F.L., 2021. Potential of Asparagopsis armata as a Biopesticide for Weed Control under an Invasive Seaweed Circular-Economy Framework. Biology 10, 1321 (DOI: 10.3390/biology10121321).

Ferreira, D., Figueiredo J., Laureano, G., Machado, A., Arrabaça, J.D., Duarte, B., Figueiredo, A. and Matos, A.R., 2021. Membrane remodelling and triacylglycerol accumulation in drought stress resistance: the case study of soybean phospholipases A. Plant Physiology and Biochemistry 169, 9-21 (DOI: 10.1016/j.plaphy.2021.10.033).

Carreiras, J., Pérez-Romero, J.A., Mateos-Naranjo, E., Redondo-Gómez, S., Matos, A.R., Caçador, I. and Duarte, B., 2021. Heavy Metal Pre-Conditioning History Modulates Spartina patens Physiological Tolerance along a Salinity Gradient. Plants 10, 2072 (DOI: 10.3390/plants10102072).

Duarte, B., Feijão, E., Cruz de Carvalho, R., Franzitta, M., Marques, J.C., Caçador, I., Cabrita, M.T. and Fonseca, V.F., 2021. Unlocking Kautsky’s dark box: development of an optical toxicity classification tool (OPTOX index) with marine diatoms exposed to emerging contaminants. Ecological Indicators 131, 108238 (DOI: 10.1016/j.ecolind.2021.108238).

Maia, M., Cavaco, A.R., Laureano, G., Cunha, J., Eiras-Dias, J., Matos, A.R., Duarte, B. and Figueiredo, A., 2021. More than just wine: the nutritional benefits of grapevine leaves. Foods 10 2251 (DOI: 10.3390/foods10102251).

Rodrigues, N., Batista, J.E., Mariano, P., Fonseca, V., Duarte, B. and Silva, S., 2021. Artificial intelligence meets marine ecotoxicology: Applying deep learning to bio-optical data from marine diatoms exposed to legacy and emerging contaminants. Biology 10, 932 (DOI: 10.3390/biology10090932).

Oliveira-Alves, S.C., Andrade, F., Prazeres, I.D., Silva, A.B., Capelo, J., Duarte, B., Caçador, I., Coelho, J., Serra, T. and Bronze, M.R., 2021. Impact of drying processes on the nutritional composition, volatile profile, phytochemical content and bioactivity of Salicornia ramosissima J.  Woods. Antioxidants 10, 1312 (DOI: 10.3390/antiox10081312).

Carvalho, R.C., Feijão, E., Duarte, I.A., Pinto, V.D., Silva, M., Matos, A.R., Silva, A.B., Caçador, I., Reis-Santos, P., Fonseca, V.F. and Duarte, B., 2021. Ecoengineering solutions for the impairment of spreading and growth of invasive Spartina patens in Mediterranean salt marshes. Frontiers in Marine Science Frontiers in Marine Science 8, 699528 (DOI: 10.3389/fmars.2021.699528).

 

Franzitta, M., Repolho, T., Paula, J.R., Caçador, I., Matos, A.R., Rosa, R. and Duarte, B., 2021. Dwarf eelgrass (Zostera noltii) fatty acid remodelling induced by climate change. Estuarine Coastal and Shelf Science 261, 107546 (DOI: 10.1016/j.ecss.2021.107546).

 

Borges, F.O., Santos, C.C., Paula, J.R., Mateos-Naranjo, E., Redondo-Goméz, S., Adams, J.B., Caçador, I., Fonseca, V.F., Reis-Santos, P., Duarte, B. and Rosa, R., 2021. Invasion and extirpation potential of native and invasive Spartina species under climate change. Frontiers in Marine Science 8, 696333 (DOI: 10.3389/fmars.2021.696333).

 

Concepcion II, R., Dadios, E., Bandala, A., Caçador, I., Fonseca, V.F.  and  Duarte, B., 2021. Applying Limnological Feature-Based Machine Learning Techniques to Chemical State Classification in Marine Transitional Systems. Frontiers in Marine Science 8, 658434 (DOI: 10.3389/fmars.2021.658434).

 

Queirós, J.P., Ramos, J.A., Cherel, Y., Franzitta, M., Duarte, B., Rosa, R., Monteiro, F., Figueiredo, A., Strugnell, J.A., Fukuda, Y., Stevens, D.W. and Xavier, J.C., 2021. Cephalopod fauna of the Pacific Southern Ocean using Antarctic toothfish (Dissostichus mawsoni) as biological samples and fisheries bycatch specimens. Deep Sea Research I 174, 103571 (DOI: 10.1016/j.dsr.2021.103571).

 

Duarte, B., Carreiras, J., Feijão, E., Reis-Santos, P., Caçador, I., Matos, A.R. and Fonseca, V.F., 2021. Fatty acid profiles of estuarine macroalgae are biomarkers of anthropogenic pressures: development and application of a multivariate pressure index. Science of the Total Environment 788, 147817 (DOI: 10.1016/j.scitotenv.2021.147817).

 

Vilhena, J.C.E., Amorim, A., Ribeiro, L.S., Duarte, B. and Pombo, M., 2021. Baseline study of trace element concentrations in sediments of the intertidal zone of Amazonian oceanic beaches. Frontiers in Marine Science 8, 671390 (DOI: 10.3389/fmars.2021.671390).

Pires, V.L., Novais, S.C., Lemos, M.F.L., Fonseca, V.F., and Duarte, B., 2021. Evaluation of multivariate biomarker indexes application in ecotoxicity tests with marine diatoms exposed to emerging contaminants. Applied Sciences 11, 3878 (DOI: 10.3390/app11093878).

Fonseca, V.F., Duarte, I.A., Duarte, B., Freitas, A., Vila Pouca, A.S., Barbosa, J., Gillanders, B.M. and Reis-Santos, P., 2021. Environmental risk assessment and bioaccumulation of pharmaceuticals in a large urbanized estuary. Science of the Total Environment 783, 147021 (DOI: 10.1016/j.scitotenv.2021.147021).

Duarte, B., Feijão, E., Goessling, J.W., Caçador, I., Matos, A.R., 2021. Pigment and Fatty Acid Production under Different Light Qualities in the Diatom Phaeodactylum tricornutum. Applied Sciences 11, 2550 (DOI: 10.3390/app11062550).

Duarte, B., Carreiras, J. and Caçador, I. 2021. Climate change impacts on salt marsh blue carbon, nitrogen and phosphorous stocks and ecosystem services. Applied Sciences 11, 1969 (DOI: 10.3390/app11041969). 

 

Duarte, B., Gameiro, C., Matos, A.R., Figueiredo, A., Sousa, M.S., Cordeiro, C., Caçador, I., Reis-Santos, P., Fonseca, V. and Cabrita, M.T., 2021. First screening of Biocides, Persistent Organic Pollutants, Pharmaceutical and Personal Care Products in Antarctic phytoplankton from Deception Island by FT-ICR-MS. Chemosphere 274, 129860 (DOI: 10.1016/j.chemosphere.2021.129860).

 

Turcios, A.E., Hielscher, M., Duarte, B., Fonseca, V.F., Caçador, I. and Papenbrock, J., 2021. Screening of emerging pollutants (EPs) in estuarine water and phytoremediation capacity of Tripolium pannonicum under controlled conditions. International Journal of Environmental Research and Public Health 18, 943 (DOI: 10.3390/ijerph18030943).

 

Duarte, B. and Caçador, I., 2021. Iberian Halophytes as Agroecological Solutions for Degraded Lands and Biosaline Agriculture. Sustainability 13, 1005 (DOI: 10.3390/su13021005).

 

Duarte, B., Gameiro, C., Utkin, A.B., Matos, A.R., Caçador, I., Fonseca, V.F. and Cabrita, M.T., 2021. A multivariate approach to chlorophyll a fluorescence data for trace element ecotoxicological trials using a model marine diatom. Estuarine Coastal and Shelf Science 250, 107170 (DOI: 10.1016/j.ecss.2021.107170).

Duarte, B., Durante, L., Marques, J.C., Reis-Santos, P., Fonseca, V.F., Caçador, I., 2021. Development of a toxicophenomic index for trace element ecotoxicity tests using the halophyte Juncus acutus: Juncus-TOX. Ecol. Indic. 121. https://doi.org/10.1016/j.ecolind.2020.107097

Carvalho, R., Feijão, E., Kletschkus, E., Marques, J.C., Reis-Santos, P., Fonseca, V.F., Papenbrock, J., Caçador, I., Duarte, B., 2020. Halophyte bio-optical phenotyping: A multivariate photochemical pressure index (Multi-PPI) to classify salt marsh anthropogenic pressures levels. Ecol. Indic. 119. https://doi.org/10.1016/j.ecolind.2020.106816

Duarte, B., Caçador, I., Matos, A.R., 2020. Lipid landscape remodelling in Sarcocornia fruticosa green and red physiotypes. Plant Physiol. Biochem. 157, 128–137. https://doi.org/10.1016/j.plaphy.2020.10.005

Duarte, B., Feijão, E., de Carvalho, R.C., Duarte, I.A., Silva, M., Matos, A.R., Cabrita, M.T., Novais, S.C., Lemos, M.F.L., Marques, J.C., Caçador, I., Reis-Santos, P., Fonseca, V.F., 2020. Effects of propranolol on growth, lipids and energy metabolism and oxidative stress response of Phaeodactylum tricornutum. Biology (Basel). 9, 1–21. https://doi.org/10.3390/biology9120478

de Carvalho, R.C., Feijão, E., Matos, A.R., Cabrita, M.T., Novais, S.C., Lemos, M.F.L., Caçador, I., Marques, J.C., Reis-Santos, P., Fonseca, V.F., Duarte, B., 2020. Glyphosate-based herbicide toxicophenomics in marine diatoms: Impacts on primary production and physiological fitness. Appl. Sci. 10, 1–21. https://doi.org/10.3390/app10217391

Feijão, E., Franzitta, M., Cabrita, M.T., Caçador, I., Duarte, B., Gameiro, C., Matos, A.R., 2020. Marine heat waves alter gene expression of key enzymes of membrane and storage lipids metabolism in Phaeodactylum tricornutum. Plant Physiol. Biochem. 156, 357–368. https://doi.org/10.1016/j.plaphy.2020.09.022

Lopes, D.G., Duarte, I.A., Antunes, M., Fonseca, V.F., 2020. Effects of antidepressants in the reproduction of aquatic organisms: a meta-analysis. Aquat. Toxicol. 227. https://doi.org/10.1016/j.aquatox.2020.105569

Roma, J., Matos, A.R., Vinagre, C., Duarte, B., 2020. Engineered metal nanoparticles in the marine environment: A review of the effects on marine fauna. Mar. Environ. Res. 161. https://doi.org/10.1016/j.marenvres.2020.105110

Silva, M., Feijão, E., da Cruz de Carvalho, R., Duarte, I.A., Matos, A.R., Cabrita, M.T., Barreiro, A., Lemos, M.F.L., Novais, S.C., Marques, J.C., Caçador, I., Reis-Santos, P., Fonseca, V.F., Duarte, B., 2020. Comfortably numb: Ecotoxicity of the non-steroidal anti-inflammatory drug ibuprofen on Phaeodactylum tricornutum. Mar. Environ. Res. 161. https://doi.org/10.1016/j.marenvres.2020.105109

Human, L.R.D., Feijão, E., de Carvalho, R., Caçador, I., Reis-Santos, P., Fonseca, V., Duarte, B., 2020. Mediterranean salt marsh sediment metal speciation and bioavailability changes induced by the spreading of non-indigenous Spartina patens. Estuar. Coast. Shelf Sci. 243. https://doi.org/10.1016/j.ecss.2020.106921

Duarte, B., Matos, A.R., Caçador, I., 2020. Photobiological and lipidic responses reveal the drought tolerance of Aster tripolium cultivated under severe and moderate drought: Perspectives for arid agriculture in the mediterranean. Plant Physiol. Biochem. 154, 304–315. https://doi.org/10.1016/j.plaphy.2020.06.019

 

Fonseca, V.F., Reis-Santos, P., Duarte, B., Cabral, H.N., Caçador, M.I., Vaz, N., Dias, J.M., Pais, M.P., 2020. Roving pharmacies: Modelling the dispersion of pharmaceutical contamination in estuaries. Ecol. Indic. 115. https://doi.org/10.1016/j.ecolind.2020.106437

Feijão, E., de Carvalho, R., Duarte, I.A., Matos, A.R., Cabrita, M.T., Novais, S.C., Lemos, M.F.L., Caçador, I., Marques, J.C., Reis-Santos, P., Fonseca, V.F., Duarte, B., 2020. Fluoxetine Arrests Growth of the Model Diatom Phaeodactylum tricornutum by Increasing Oxidative Stress and Altering Energetic and Lipid Metabolism. Front. Microbiol. 11. https://doi.org/10.3389/fmicb.2020.01803

da Silva, J., Duarte, B., Utkin, A.B., 2020. Travelling Expenses: The Energy Cost of Diel Vertical Migrations of Epipelic Microphytobenthos. Front. Mar. Sci. 7. https://doi.org/10.3389/fmars.2020.00433

Martinho, F., Pina, B., Nunes, M., Vasconcelos, R.P., Fonseca, V.F., Crespo, D., Primo, A.L., Vaz, A., Pardal, M.A., Gillanders, B.M., Tanner, S.E., Reis-Santos, P., 2020. Water and Otolith Chemistry: Implications for Discerning Estuarine Nursery Habitat Use of a Juvenile Flatfish. Front. Mar. Sci. 7. https://doi.org/10.3389/fmars.2020.00347

Duarte, I.A., Reis-Santos, P., Novais, S.C., Rato, L.D., Lemos, M.F.L., Freitas, A., Pouca, A.S. V, Barbosa, J., Cabral, H.N., Fonseca, V.F., 2020. Depressed, hypertense and sore: Long-term effects of fluoxetine, propranolol and diclofenac exposure in a top predator fish. Sci. Total Environ. 712. https://doi.org/10.1016/j.scitotenv.2020.136564

Carreiras, J., Alberto Pérez-Romero, J., Mateos-Naranjo, E., Redondo-Gómez, S., Rita Matos, A., Caçador, I., Duarte, B., 2020. The effect of heavy metal contamination pre-conditioning in the heat stress tolerance of native and invasive Mediterranean halophytes. Ecol. Indic. 111. https://doi.org/10.1016/j.ecolind.2019.106045

Sghaier, D.B., Pedro, S., Duarte, B., Diniz, M., Caçador, I., Sleimi, N., 2020. Arsenic accumulation, compartmentation, and complexation in arthrocnemum indicum, Plant Ecophysiology and Adaptation under Climate Change: Mechanisms and Perspectives I: General Consequences and Plant Responses. https://doi.org/10.1007/978-981-15-2156-0_25

Ferrario, J., Gestoso, I., Ramalhosa, P., Cacabelos, E., Duarte, B., Caçador, I., Canning-Clode, J., 2020. Marine fouling communities from artificial and natural habitats: Comparison of resistance to chemical and physical disturbances. Aquat. Invasions 15, 196–216. https://doi.org/10.3391/AI.2020.15.2.01

Cabrita, M.T., Brito, P., Caçador, I., Duarte, B., 2020. Impacts of phytoplankton blooms on trace metal recycling and bioavailability during dredging events in the Sado estuary (Portugal). Mar. Environ. Res. 153. https://doi.org/10.1016/j.marenvres.2019.104837

Duarte, B., Prata, D., Matos, A.R., Cabrita, M.T., Caçador, I., Marques, J.C., Cabral, H.N., Reis-Santos, P., Fonseca, V.F., 2019. Ecotoxicity of the lipid-lowering drug bezafibrate on the bioenergetics and lipid metabolism of the diatom Phaeodactylum tricornutum. Sci. Total Environ. 650, 2085–2094. https://doi.org/10.1016/j.scitotenv.2018.09.354

Cabrita, M.T., Duarte, B., Cesário, R., Mendes, R., Hintelmann, H., Eckey, K., Dimock, B., Caçador, I., Canário, J., 2019. Mercury mobility and effects in the salt-marsh plant Halimione portulacoides: Uptake, transport, and toxicity and tolerance mechanisms. Sci. Total Environ. 650, 111–120. https://doi.org/10.1016/j.scitotenv.2018.08.335

Pérez-Romero, J.A., Duarte, B., Barcia-Piedras, J.-M., Matos, A.R., Redondo-Gómez, S., Caçador, I., Mateos-Naranjo, E., 2019. Investigating the physiological mechanisms underlying Salicornia ramosissima response to atmospheric CO2 enrichment under coexistence of prolonged soil flooding and saline excess. Plant Physiol. Biochem. 135, 149–159. https://doi.org/10.1016/j.plaphy.2018.12.003

Ramalhosa, P., Gestoso, I., Duarte, B., Caçador, I., Canning-Clode, J., 2019. Metal pollution affects both native and non-indigenous biofouling recruitment in a subtropical island system. Mar. Pollut. Bull. 141, 373–386. https://doi.org/10.1016/j.marpolbul.2019.02.072

Laureano, G., Figueiredo, J., Cavaco, A.R., Duarte, B., Caçador, I., Malhó, R., Sousa Silva, M., Matos, A.R., Figueiredo, A., 2019. Author Correction: The interplay between membrane lipids and phospholipase A family members in grapevine resistance against Plasmopara viticola (Scientific Reports, (2018), 8, 1, (14538), 10.1038/s41598-018-32559-z). Sci. Rep. 9. https://doi.org/10.1038/s41598-019-42135-8

Sebastiana, M., Duarte, B., Monteiro, F., Malhó, R., Caçador, I., Matos, A.R., 2019. The leaf lipid composition of ectomycorrhizal oak plants shows a drought-tolerance signature. Plant Physiol. Biochem. 144, 157–165. https://doi.org/10.1016/j.plaphy.2019.09.032

Bortolus, A., Adam, P., Adams, J.B., Ainouche, M.L., Ayres, D., Bertness, M.D., Bouma, T.J., Bruno, J.F., Caçador, I., Carlton, J.T., Castillo, J.M., Costa, C.S.B., Davy, A.J., Deegan, L., Duarte, B., Figueroa, E., Gerwein, J., Gray, A.J., Grosholz, E.D., Hacker, S.D., Hughes, A.R., Mateos-Naranjo, E., Mendelssohn, I.A., Morris, J.T., Muñoz-Rodríguez, A.F., Nieva, F.J.J., Levin, L.A., Li, B., Liu, W., Pennings, S.C., Pickart, A., Redondo-Gómez, S., Richardson, D.M., Salmon, A., Schwindt, E., Silliman, B.R., Sotka, E.E., Stace, C., Sytsma, M., Temmerman, S., Turner, R.E., Valiela, I., Weinstein, M.P., Weis, J.S., 2019. Supporting Spartina: Interdisciplinary perspective shows Spartina as a distinct solid genus. Ecology 100. https://doi.org/10.1002/ecy.2863

Fonseca, V.F., França, S., Duarte, B., Caçador, I., Cabral, H.N., Mieiro, C.L., Coelho, J.P., Pereira, E., Reis-Santos, P., 2019. Spatial variation in mercury bioaccumulation and magnification in a temperate estuarine food web. Front. Mar. Sci. 6. https://doi.org/10.3389/fmars.2019.00117

Duarte, B., Matos, A.R., Pedro, S., Marques, J.C., Adão, H. and Caçador, I., 2019. Dwarf eelgrass (Zostera noltii) leaf fatty acid profile during a natural restoration process: Physiological and ecological implications. Ecological Indicators 106, 105452. https://doi.org/10.1016/j.ecolind.2019.105452.​

Fonseca, V.F., França, S., Duarte, B., Caçador, I., Cabral, H.N., Mieiro, C.L., Coelho, J.P., Pereira, E. and Reis-Santos, P., 2019. Spatial variation in mercury bioaccumulation and magnification in a temperate estuarine food web. Frontiers in Marine Science 6, 117. 

https://doi.org/10.3389/fmars.2019.00117.

Ramalhosa, P., Gestoso, I., Duarte, B., Caçador, I., Canning-Clode, J., 2019. Metal pollution affects both native and non-indigenous biofouling recruitment in a subtropical island system. Mar. Pollut. Bull. 141, 373–386. https://doi.org/10.1016/j.marpolbul.2019.02.072

Duarte, B., Prata, D., Matos, A.R., Cabrita, M.T., Caçador, I., Marques, J.C., Cabral, H.N., Reis-Santos, P., Fonseca, V.F., 2019. Ecotoxicity of the lipid-lowering drug bezafibrate on the bioenergetics and lipid metabolism of the diatom Phaeodactylum tricornutum. Sci. Total Environ. 650, 2085–2094. https://doi.org/10.1016/j.scitotenv.2018.09.354

Cabrita, M.T., Duarte, B., Cesário, R., Mendes, R., Hintelmann, H., Eckey, K., Dimock, B., Caçador, I., Canário, J., 2019. Mercury mobility and effects in the salt-marsh plant Halimione portulacoides: Uptake, transport, and toxicity and tolerance mechanisms. Sci. Total Environ. 650, 111–120. https://doi.org/10.1016/j.scitotenv.2018.08.335

Pérez-Romero, J.A., Duarte, B., Barcia-Piedras, J.-M., Matos, A.R., Redondo-Gómez, S., Caçador, I., Mateos-Naranjo, E., 2019. Investigating the physiological mechanisms underlying Salicornia ramosissima response to atmospheric CO2 enrichment under coexistence of prolonged soil flooding and saline excess. Plant Physiol. Biochem. 135, 149–159. https://doi.org/10.1016/j.plaphy.2018.12.003

Pérez-Romero, J.A., Idaszkin, Y.L., Duarte, B., Baeta, A., Marques, J.C., Redondo-Gómez, S., Caçador, I., Mateos-Naranjo, E., 2018. Atmospheric CO2 enrichment effect on the Cu-tolerance of the C4 cordgrass Spartina densiflora. J. Plant Physiol. 220. https://doi.org/10.1016/j.jplph.2017.11.005

Paredes-Páliz, K., Rodríguez-Vázquez, R., Duarte, B., Caviedes, M.A., Mateos-Naranjo, E., Redondo-Gómez, S., Caçador, M.I., Rodríguez-Llorente, I.D., Pajuelo, E., 2018. Investigating the mechanisms underlying phytoprotection by plant growth-promoting rhizobacteria in Spartina densiflora under metal stress. Plant Biol. 20. https://doi.org/10.1111/plb.12693

Laureano, G., Figueiredo, J., Cavaco, A.R., Duarte, B., Caçador, I., Malhó, R., Sousa Silva, M., Matos, A.R., Figueiredo, A., 2018. The interplay between membrane lipids and phospholipase A family members in grapevine resistance against Plasmopara viticola. Sci. Rep. 8. https://doi.org/10.1038/s41598-018-32559-z

Cabrita, M.T., Duarte, B., Gameiro, C., Godinho, R.M., Caçador, I., 2018. Photochemical features and trace element substituted chlorophylls as early detection biomarkers of metal exposure in the model diatom Phaeodactylum tricornutum. Ecol. Indic. 95, 1038–1052. https://doi.org/10.1016/j.ecolind.2017.07.057

Feijão, E., Gameiro, C., Franzitta, M., Duarte, B., Caçador, I., Cabrita, M.T., Matos, A.R., 2018. Heat wave impacts on the model diatom Phaeodactylum tricornutum: Searching for photochemical and fatty acid biomarkers of thermal stress. Ecol. Indic. 95, 1026–1037. https://doi.org/10.1016/j.ecolind.2017.07.058

Duarte, B., Silva, H., Dias, J.M., Sleimi, N., Marques, J.C., Caçador, I., 2018. Functional and ecophysiological traits of Halimione portulacoides and Sarcocornia perennis ecotypes in Mediterranean salt marshes under different tidal exposures. Ecol. Res. 33, 1145–1156. https://doi.org/10.1007/s11284-018-1632-y

Vidigal, P., Duarte, B., Cavaco, A.R., Caçador, I., Figueiredo, A., Matos, A.R., Viegas, W., Monteiro, F., 2018. Preliminary diversity assessment of an undervalued tropical bean (Lablab purpureus (L.) Sweet) through fatty acid profiling. Plant Physiol. Biochem. 132, 508–514. https://doi.org/10.1016/j.plaphy.2018.10.001

Reis-Santos, P., Pais, M., Duarte, B., Caçador, I., Freitas, A., Vila Pouca, A.S., Barbosa, J., Leston, S., Rosa, J., Ramos, F., Cabral, H.N., Gillanders, B.M., Fonseca, V.F., 2018. Screening of human and veterinary pharmaceuticals in estuarine waters: A baseline assessment for the Tejo estuary. Mar. Pollut. Bull. 135, 1079–1084. https://doi.org/10.1016/j.marpolbul.2018.08.036

Reis-Santos, P., Vasconcelos, R.P., Tanner, S.E., Fonseca, V.F., Cabral, H.N., Gillanders, B.M., 2018. Extrinsic and intrinsic factors shape the ability of using otolith chemistry to characterize estuarine environmental histories. Mar. Environ. Res. 140, 332–341. https://doi.org/10.1016/j.marenvres.2018.06.002

Duarte, B., Cabrita, M.T., Vidal, T., Pereira, J.L., Pacheco, M., Pereira, P., Canário, J., Gonçalves, F.J.M., Matos, A.R., Rosa, R., Marques, J.C., Caçador, I., Gameiro, C., 2018. Phytoplankton community-level bio-optical assessment in a naturally mercury contaminated Antarctic ecosystem (Deception Island). Mar. Environ. Res. 140, 412–421. https://doi.org/10.1016/j.marenvres.2018.07.014

Duarte, B., Martins, I., Rosa, R., Matos, A.R., Roleda, M.Y., Reusch, T.B.H., Engelen, A.H., Serrão, E.A., Pearson, G.A., Marques, J.C., Caçador, I., Duarte, C.M., Jueterbock, A., 2018. Climate change impacts on seagrass meadows and macroalgal forests: An integrative perspective on acclimation and adaptation potential. Front. Mar. Sci. 5. https://doi.org/10.3389/fmars.2018.00190

Pérez-Romero, J.A., Idaszkin, Y.L., Barcia-Piedras, J.-M., Duarte, B., Redondo-Gómez, S., Caçador, I., Mateos-Naranjo, E., 2018. Disentangling the effect of atmospheric CO2 enrichment on the halophyte Salicornia ramosissima J. Woods physiological performance under optimal and suboptimal saline conditions. Plant Physiol. Biochem. 127, 617–629. https://doi.org/10.1016/j.plaphy.2018.04.041

Duarte, B., Carreiras, J., Pérez-Romero, J.A., Mateos-Naranjo, E., Redondo-Gómez, S., Matos, A.R., Marques, J.C., Caçador, I., 2018. Halophyte fatty acids as biomarkers of anthropogenic-driven contamination in Mediterranean marshes: Sentinel species survey and development of an integrated biomarker response (IBR) index. Ecol. Indic. 87, 86–96. https://doi.org/10.1016/j.ecolind.2017.12.050

Duarte, B., Matos, A.R., Marques, J.C., Caçador, I., 2018. Leaf fatty acid remodeling in the salt-excreting halophytic grass Spartina patens along a salinity gradient. Plant Physiol. Biochem. 124, 112–116. https://doi.org/10.1016/j.plaphy.2018.01.007

Duarte, I.A., Vasconcelos, R.P., França, S., Batista, M.I., Tanner, S., Cabral, H.N., Fonseca, V.F., 2018. Short-term variability of fish condition and growth in estuarine and shallow coastal areas. Mar. Environ. Res. 134, 130–137. https://doi.org/10.1016/j.marenvres.2018.01.008

Duarte, B., Neto, J.M., Marques, J.C., Adams, J.B., Caçador, I., 2017. Marine angiosperm indices used to assess ecological status within the Water Framework Directive and South African National Water Act: Learning from differences and common issues. Ecol. Indic. 83, 192–200. https://doi.org/10.1016/j.ecolind.2017.07.032

Goodwin, K.D., Thompson, L.R., Duarte, B., Kahlke, T., Thompson, A.R., Marques, J.C., Caçador, I., 2017. DNA sequencing as a tool to monitor marine ecological status. Front. Mar. Sci. 4. https://doi.org/10.3389/fmars.2017.00107

Duarte, B., Pedro, S., Marques, J.C., Adão, H., Caçador, I., 2017. Zostera noltii development probing using chlorophyll a transient analysis (JIP-test) under field conditions: Integrating physiological insights into a photochemical stress index. Ecol. Indic. 76, 219–229. https://doi.org/10.1016/j.ecolind.2017.01.023

Duarte, B., Vaz, N., Valentim, J.M., Dias, J.M., Silva, H., Marques, J.C., Sleimi, N., Caçador, I., 2017. Revisiting the outwelling hypothesis: Modelling salt marsh detrital metal exports under extreme climatic events. Mar. Chem. 191, 24–33. https://doi.org/10.1016/j.marchem.2016.12.002

Duarte, B., Cabrita, M.T., Gameiro, C., Matos, A.R., Godinho, R., Marques, J.C., Caçador, I., 2017. Disentangling the photochemical salinity tolerance in Aster tripolium L.: connecting biophysical traits with changes in fatty acid composition. Plant Biol. 19, 239–248. https://doi.org/10.1111/plb.12517

Repolho, T., Duarte, B., Dionísio, G., Paula, J.R., Lopes, A.R., Rosa, I.C., Grilo, T.F., Caçador, I., Calado, R., Rosa, R., 2017. Seagrass ecophysiological performance under ocean warming and acidification. Sci. Rep. 7. https://doi.org/10.1038/srep41443

 

Duarte, I.A., Reis-Santos, P., França, S., Cabral, H., Fonseca, V.F., 2017. Biomarker responses to environmental contamination in estuaries: A comparative multi-taxa approach. Aquat. Toxicol. 189, 31–41. https://doi.org/10.1016/j.aquatox.2017.05.010

Becker, V.I., Goessling, J.W., Duarte, B., Caçador, I., Liu, F., Rosenqvist, E., Jacobsen, S.-E., 2017. Combined effects of soil salinity and high temperature on photosynthesis and growth of quinoa plants (Chenopodium quinoa). Funct. Plant Biol. 44, 665–678. https://doi.org/10.1071/FP16370

Pédron, N., Le Du, J., Charrier, G., Zambonino-Infante, J.-L., Le Bayon, N., Vasconcelos, R.P., Fonseca, V.F., Le Grand, F., Laroche, J., 2017. Contrasting patterns of energy metabolism in northern vs southern peripheral European flounder populations exposed to temperature rising and hypoxia. Mar. Environ. Res. 129, 258–267. https://doi.org/10.1016/j.marenvres.2017.06.010

Sghaier, D.B., Pedro, S., Diniz, M.S., Duarte, B., Caçador, I., Sleimi, N., 2016. Tissue localization and distribution of As and Al in the halophyte Tamarix gallica under controlled conditions. Front. Mar. Sci. 3. https://doi.org/10.3389/fmars.2016.00274

Brennecke, D., Duarte, B., Paiva, F., Caçador, I., Canning-Clode, J., 2016. Microplastics as vector for heavy metal contamination from the marine environment. Estuar. Coast. Shelf Sci. 178, 189–195. https://doi.org/10.1016/j.ecss.2015.12.003

Duarte, B., Marques, J.C., Caçador, I., 2016. Ecophysiological response of native and invasive Spartina species to extreme temperature events in Mediterranean marshes. Biol. Invasions 18, 2189–2205. https://doi.org/10.1007/s10530-015-0958-4

Baumel, A., Rousseau-Gueutin, M., Sapienza-Bianchi, C., Gareil, A., Duong, N., Rousseau, H., Coriton, O., Amirouche, R., Sciandrello, S., Duarte, B., Caçador, I., Castillo, J.M., Ainouche, M., 2016. Spartina versicolor Fabre: Another case of Spartina trans-Atlantic introduction? Biol. Invasions 18, 2123–2135. https://doi.org/10.1007/s10530-016-1128-z

Cabrita, M.T., Gameiro, C., Utkin, A.B., Duarte, B., Caçador, I., Cartaxana, P., 2016. Photosynthetic pigment laser-induced fluorescence indicators for the detection of changes associated with trace element stress in the diatom model species Phaeodactylum tricornutum. Environ. Monit. Assess. 188. https://doi.org/10.1007/s10661-016-5293-4

Caçador, I., Duarte, B., 2015. Chromium phyto-transformation in salt marshes: The role of halophytes, Phytoremediation: Management of Environmental Contaminants, Volume 2. https://doi.org/10.1007/978-3-319-10969-5_18

 

Duarte, B., Santos, D., Marques, J.C., Caçador, I., 2015. Ecophysiological constraints of two invasive plant species under a saline gradient: Halophytes versus glycophytes. Estuar. Coast. Shelf Sci. 167, 154–165. https://doi.org/10.1016/j.ecss.2015.04.007

Duarte, B., Santos, D., Marques, J.C., Caçador, I., 2015. Impact of heat and cold events on the energetic metabolism of the C3 halophyte Halimione portulacoides. Estuar. Coast. Shelf Sci. 167, 166–177. https://doi.org/10.1016/j.ecss.2015.10.003

Duarte, B., Baeta, A., Rousseau-Gueutin, M., Ainouche, M., Marques, J.C., Caçador, I., 2015. A tale of two Spartinas: Climatic, photobiological and isotopic insights on the fitness of non-indigenous versus native species. Estuar. Coast. Shelf Sci. 167, 178–190. https://doi.org/10.1016/j.ecss.2015.06.015

Santos, D., Duarte, B., Caçador, I., 2015. Biochemical and photochemical feedbacks of acute Cd toxicity in Juncus acutus seedlings: The role of non-functional Cd-chlorophylls. Estuar. Coast. Shelf Sci. 167, 228–239. https://doi.org/10.1016/j.ecss.2015.10.005

Pedro, S., Duarte, B., Raposo de Almeida, P., Caçador, I., 2015. Metal speciation in salt marsh sediments: Influence of halophyte vegetation in salt marshes with different morphology. Estuar. Coast. Shelf Sci. 167, 248–255. https://doi.org/10.1016/j.ecss.2015.05.034

Pedro, S., Duarte, B., Reis, G., Pereira, E., Duarte, A.C., Costa, J.L., Caçador, I., Almeida, P.R.D., 2015. Metal partitioning and availability in estuarine surface sediments: Changes promoted by feeding activity of Scrobicularia plana and Liza ramada. Estuar. Coast. Shelf Sci. 167, 240–247. https://doi.org/10.1016/j.ecss.2015.07.039

Duarte, B., Goessling, J.W., Marques, J.C., Caçador, I., 2015. Ecophysiological constraints of Aster tripolium under extreme thermal events impacts: Merging biophysical, biochemical and genetic insights. Plant Physiol. Biochem. 97, 217–228. https://doi.org/10.1016/j.plaphy.2015.10.015

Fonseca, V.F., Vasconcelos, R.P., Tanner, S.E., França, S., Serafim, A., Lopes, B., Company, R., Bebianno, M.J., Costa, M.J., Cabral, H.N., 2015. Habitat quality of estuarine nursery grounds: Integrating non-biological indicators and multilevel biological responses in Solea senegalensis. Ecol. Indic. 58, 335–345. https://doi.org/10.1016/j.ecolind.2015.05.064

Sghaier, D.B., Duarte, B., Bankaji, I., Caçador, I., Sleimi, N., 2015. Growth, chlorophyll fluorescence and mineral nutrition in the halophyte Tamarix gallica cultivated in combined stress conditions: Arsenic and NaCl. J. Photochem. Photobiol. B Biol. 149, 204–214. https://doi.org/10.1016/j.jphotobiol.2015.06.003

Pedro, S., Duarte, B., Castro, N., Almeida, P.R., Caçador, I., Costa, J.L., 2015. The Lusitanian toadfish as bioindicator of estuarine sediment metal burden: The influence of gender and reproductive metabolism. Ecol. Indic. 48, 370–379. https://doi.org/10.1016/j.ecolind.2014.08.041

Kopf, A., Bicak, M., Kottmann, R., Schnetzer, J., Kostadinov, I., Lehmann, K., Fernandez-Guerra, A., Jeanthon, C., Rahav, E., Ullrich, M., Wichels, A., Gerdts, G., Polymenakou, P., Kotoulas, G., Siam, R., Abdallah, R.Z., Sonnenschein, E.C., Cariou, T., O’Gara, F., Jackson, S., Orlic, S., Steinke, M., Busch, J., Duarte, B., Caçador, I., Canning-Clode, J., Bobrova, O., Marteinsson, V., Reynisson, E., Loureiro, C.M., Luna, G.M., Quero, G.M., Löscher, C.R., Kremp, A., DeLorenzo, M.E., Øvreås, L., Tolman, J., LaRoche, J., Penna, A., Frischer, M., Davis, T., Katherine, B., Meyer, C.P., Ramos, S., Magalhães, C., Jude-Lemeilleur, F., Aguirre-Macedo, M.L., Wang, S., Poulton, N., Jones, S., Collin, R., Fuhrman, J.A., Conan, P., Alonso, C., Stambler, N., Goodwin, K., Yakimov, M.M., Baltar, F., Bodrossy, L., Van De Kamp, J., Frampton, D.E.F., Ostrowski, M., Van Ruth, P., Malthouse, P., Claus, S., Deneudt, K., Mortelmans, J., Pitois, S., Wallom, D., Salter, I., Costa, R., Schroeder, D.C., Kandil, M.M., Amaral, V., Biancalana, F., Santana, R., Pedrotti, M.L., Yoshida, T., Ogata, H., Ingleton, T., Munnik, K., Rodriguez-Ezpeleta, N., Berteaux-Lecellier, V., Wecker, P., Cancio, I., Vaulot, D., Bienhold, C., Ghazal, H., Chaouni, B., Essayeh, S., Ettamimi, S., Zaid, E.H., Boukhatem, N., Bouali, A., Chahboune, R., Barrijal, S., Timinouni, M., El Otmani, F., Bennani, M., Mea, M., Todorova, N., Karamfilov, V., Ten Hoopen, P., Cochrane, G., L’Haridon, S., Can Bizsel, K., Vezzi, A., Lauro, F.M., Martin, P., Jensen, R.M., Hinks, J., Gebbels, S., Rosselli, R., De Pascale, F., Schiavon, R., Dos Santos, A., Villar, E., Pesant, S., Cataletto, B., Malfatti, F., Edirisinghe, R., Herrera Silveira, J.A., Barbier, M., Turk, V., Tinta, T., Fuller, W.J., Salihoglu, I., Serakinci, N., Ergoren, M.C., Bresnan, E., Iriberri, J., Nyhus, P.A.F., Bente, E., Karlsen, H.E., Golyshin, P.N., Gasol, J.M., Moncheva, S., Dzhembekova, N., Johnson, Z., Sinigalliano, C.D., Gidley, M.L., Zingone, A., Danovaro, R., Tsiamis, G., Clark, M.S., Costa, A.C., El Bour, A., Martins, A.M., Eric Collins, R., Ducluzeau, A.-L., Martinez, J., Costello, M.J., Amaral-Zettler, L.A., Gilbert, J.A., Davies, N., Field, D., Glöckner, F.O., 2015. The ocean sampling day consortium. Gigascience 4. https://doi.org/10.1186/s13742-015-0066-5

Duarte, B., Santos, D., Silva, H., Marques, J.C., Caçador, I., 2014. Photochemical and biophysical feedbacks of C3 and C4 Mediterranean halophytes to atmospheric CO2 enrichment confirmed by their stable isotope signatures. Plant Physiol. Biochem. 80. https://doi.org/10.1016/j.plaphy.2014.03.016

Couto, T., Martins, I., Duarte, B., Caçador, I., Marques, J.C., 2014. Modelling the effects of global temperature increase on the growth of salt marsh plants. Appl. Ecol. Environ. Res. 12. https://doi.org/10.15666/aeer/1203_753764

Duarte, B., Sleimi, N., Cagador, I., 2014. Biophysical and biochemical constraints imposed by salt stress: Learning from halophytes. Front. Plant Sci. 5, 1–10. https://doi.org/10.3389/fpls.2014.00746

Duarte, B., Valentim, J.M., Dias, J.M., Silva, H., Marques, J.C., Caçador, I., 2014. Modelling sea level rise (SLR) impacts on salt marsh detrital outwelling C and N exports from an estuarine coastal lagoon to the ocean (Ria de Aveiro, Portugal). Ecol. Modell. 289, 36–44. https://doi.org/10.1016/j.ecolmodel.2014.06.020

Caçador, I., Duarte, B., 2014. Eutrophication impacts on salt marshes natural metal remediation, in: Eutrophication: Causes, Consequences and Control. Springer Netherlands, Center of Oceanography, Faculty of Sciences, University of Lisbon, Campo Grande, Lisbon, 1749-016, Portugal, pp. 131–137. https://doi.org/10.1007/978-94-007-7814-6_11

Duarte, B., Santos, D., Marques, J.C., Caçador, I., 2014. Biophysical probing of Spartina maritima photo-system II changes during prolonged tidal submersion periods. Plant Physiol. Biochem. 77, 122–132. https://doi.org/10.1016/j.plaphy.2014.01.023

Santos, D., Duarte, B., Caçador, I., 2014. Unveiling Zn hyperaccumulation in Juncus acutus: Implications on the electronic energy fluxes and on oxidative stress with emphasis on non-functional Zn-chlorophylls. J. Photochem. Photobiol. B Biol. 140, 228–239. https://doi.org/10.1016/j.jphotobiol.2014.07.019

Freitas, J., Duarte, B., Caçador, I., 2014. Biogeochemical drivers of phosphatase activity in salt marsh sediments. J. Sea Res. 93, 57–62. https://doi.org/10.1016/j.seares.2014.04.002

Duarte, B., Santos, D., Silva, H., Marques, J.C., Caçador, I., Sleimi, N., 2014. Light-dark O2 dynamics in submerged leaves of C3 and C4 halophytes under increased dissolved CO 2 : Clues for saltmarsh response to climate change. AoB Plants 6. https://doi.org/10.1093/aobpla/plu067

 

Fonseca, V.F., Vasconcelos, R.P., França, S., Serafim, A., Lopes, B., Company, R., Bebianno, M.J., Costa, M.J., Cabral, H.N., 2014. Modeling fish biological responses to contaminants and natural variability in estuaries. Mar. Environ. Res. 96, 45–55. https://doi.org/10.1016/j.marenvres.2013.10.011

Duarte, B., Silva, G., Costa, J.L., Medeiros, J.P., Azeda, C., Sá, E., Metelo, I., Costa, M.J., Caçador, I., 2014. Heavy metal distribution and partitioning in the vicinity of the discharge areas of Lisbon drainage basins (Tagus Estuary, Portugal). J. Sea Res. 93, 101–111. https://doi.org/10.1016/j.seares.2014.01.003

Duarte, B., Freitas, J., Valentim, J., Medeiros, J.P., Costa, J.L., Silva, H., Dias, J.M., Costa, M.J., Marques, J.C., Caçador, I., 2014. Abiotic control modelling of salt marsh sediments respiratory CO 2 fluxes: Application to increasing temperature scenarios. Ecol. Indic. 46, 110–118. https://doi.org/10.1016/j.ecolind.2014.06.018

Fonseca, V.F., Vasconcelos, R.P., Gamito, R., Pasquaud, S., Gonçalves, C.I., Costa, J.L., Costa, M.J., Cabral, H.N., 2013. Fish community-based measures of estuarine ecological quality and pressure-impact relationships. Estuar. Coast. Shelf Sci. 134, 128–137. https://doi.org/10.1016/j.ecss.2013.02.001

Pasquaud, S., Courrat, A., Fonseca, V.F., Gamito, R., Gonçalves, C.I., Lobry, J., Lepage, M., Costa, M.J., Cabral, H., 2013. Strength and time lag of relationships between human pressures and fish-based metrics used to assess ecological quality of estuarine systems. Estuar. Coast. Shelf Sci. 134, 119–127. https://doi.org/10.1016/j.ecss.2013.02.002

Valentim, J.M., Vaz, N., Silva, H., Duarte, B., Caçador, I., Dias, J.M., 2013. Tagus estuary and Ria de Aveiro salt marsh dynamics and the impact of sea level rise. Estuar. Coast. Shelf Sci. 130, 138–151. https://doi.org/10.1016/j.ecss.2013.04.005

Duarte, B., Couto, T., Freitas, J., Valentim, J., Silva, H., Marques, J.C., Dias, J.M., Caçador, I., 2013. Abiotic modulation of Spartina maritima photobiology in different latitudinal populations. Estuar. Coast. Shelf Sci. 130, 127–137. https://doi.org/10.1016/j.ecss.2013.02.008

Serafim, A., Company, R., Lopes, B., Pereira, C., Cravo, A., Fonseca, V.F., França, S., Bebianno, M.J., Cabral, H.N., 2013. Evaluation of sediment toxicity in different Portuguese estuaries: Ecological impact of metals and polycyclic aromatic hydrocarbons. Estuar. Coast. Shelf Sci. 130, 30–41. https://doi.org/10.1016/j.ecss.2013.04.018

Valentim, J.M., Vaz, L., Vaz, N., Silva, H., Duarte, B., Caçador, I., Dias, J.M., 2013. Sea level rise impact in residual circulation in Tagus estuary and Ria de Aveiro lagoon. J. Coast. Res. 1981–1986. https://doi.org/10.2112/SI65-335

Duarte, B., Santos, D., Caçador, I., 2013. Halophyte anti-oxidant feedback seasonality in two salt marshes with different degrees of metal contamination: Search for an efficient biomarker. Funct. Plant Biol. 40, 922–930. https://doi.org/10.1071/FP12315

Couto, T., Duarte, B., Barroso, D., Caçador, I., Marques, J.C., 2013. Halophytes as sources of metals in estuarine systems with low levels of contamination. Funct. Plant Biol. 40, 931–939. https://doi.org/10.1071/FP12300

Duarte, B., Caçador, I., Marques, J.C., Croudace, I.W., 2013. Tagus estuary salt marshes feedback to sea level rise over a 40-year period: Insights from the application of geochemical indices. Ecol. Indic. 34, 268–276. https://doi.org/10.1016/j.ecolind.2013.05.015

Duarte, B., Santos, D., Marques, J.C., Caçador, I., 2013. Ecophysiological adaptations of two halophytes to salt stress: Photosynthesis, PS II photochemistry and anti-oxidant feedback - Implications for resilience in climate change. Plant Physiol. Biochem. 67, 178–188. https://doi.org/10.1016/j.plaphy.2013.03.004

Couto, T., Duarte, B., Caçador, I., Baeta, A., Marques, J.C., 2013. Salt marsh plants carbon storage in a temperate Atlantic estuary illustrated by a stable isotopic analysis based approach. Ecol. Indic. 32, 305–311. https://doi.org/10.1016/j.ecolind.2013.04.004

Tanner, S.E., Reis-Santos, P., Vasconcelos, R.P., Fonseca, V.F., França, S., Cabral, H.N., Thorrold, S.R., 2013. Does otolith geochemistry record ambient environmental conditions in a temperate tidal estuary? J. Exp. Mar. Bio. Ecol. 441, 7–15. https://doi.org/10.1016/j.jembe.2013.01.009

Duarte, B., Freitas, J., Couto, T., Valentim, J., Dias, J.M., Silva, H., Marques, J.C., Caçador, I., 2013. New multi-metric Salt Marsh Sediment Microbial Index (SSMI) application to salt marsh sediments ecological status assessment. Ecol. Indic. 29, 390–397. https://doi.org/10.1016/j.ecolind.2013.01.008

Fonseca, V.F., Narciso, L., Cabral, H.N., 2013. Lipid-based indicators of nutritional condition in juvenile sole Solea solea. J. Appl. Ichthyol. 29, 154–162. https://doi.org/10.1111/jai.12000

Caçador, I., Neto, J.M., Duarte, B., Barroso, D. V, Pinto, M., Marques, J.C., 2013. Development of an Angiosperm Quality Assessment Index (AQuA-Index) for ecological quality evaluation of Portuguese water bodies - A multi-metric approach. Ecol. Indic. 25, 141–148. https://doi.org/10.1016/j.ecolind.2012.09.021

Caçador, I., Duarte, B., 2012. Tagus estuary salt marsh structure and dynamics: A historical perspective, Estuaries: Classification, Ecology and Human Impacts.

Duarte, B., Couto, T., Marques, J.C., Caçador, I., 2012. Scirpus maritimus leaf pigment profile and photochemistry during senescence: Implications on carbon sequestration. Plant Physiol. Biochem. 57. https://doi.org/10.1016/j.plaphy.2012.05.019

Duarte, B., Silva, V., Caçador, I., 2012. Hexavalent chromium reduction, uptake and oxidative biomarkers in Halimione portulacoides. Ecotoxicol. Environ. Saf. 83. https://doi.org/10.1016/j.ecoenv.2012.04.026

Duarte, B., Caçador, I., 2012. Particulate metal distributIon in Tagus estuary (Portugal) during a flood episode. Mar. Pollut. Bull. 64. https://doi.org/10.1016/j.marpolbul.2012.07.016

Gamito, R., Pasquaud, S., Courrat, A., Drouineau, H., Fonseca, V.F., Gonçalves, C.I., Wouters, N., Costa, J.L., Lepage, M., Costa, M.J., Cabral, H.N., 2012. Influence of sampling effort on metrics of fish-based indices for the assessment of estuarine ecological quality. Ecol. Indic. 23, 9–18. https://doi.org/10.1016/j.ecolind.2012.03.009

Gonalves, C.I., Pasquaud, S., Gamito, R., Fonseca, V.F., Costa, J.L., Erzini, K., Gonalves, J.M.S., Martins, J., Leite, L., Castro, N., Andrade, J.P., Ramos, S., Bordalo, A., Amorim, E., Neto, J.M., Marques, J.C., Costa, M.J., Cabral, H., 2012. Robustness of the Estuarine Fish Assessment Index (EFAI) regarding water body definition criteria. Ecol. Indic. 20, 1–8. https://doi.org/10.1016/j.ecolind.2012.02.001

Duarte, B., Freitas, J., Caador, I., 2012. Sediment microbial activities and physic-chemistry as progress indicators of salt marsh restoration processes. Ecol. Indic. 19, 231–239. https://doi.org/10.1016/j.ecolind.2011.07.014

Serafim, A., Company, R., Lopes, B., Fonseca, V.F., Frana, S., Vasconcelos, R.P., Bebianno, M.J., Cabral, H.N., 2012. Application of an integrated biomarker response index (IBR) to assess temporal variation of environmental quality in two Portuguese aquatic systems. Ecol. Indic. 19, 215–225. https://doi.org/10.1016/j.ecolind.2011.08.009

Costa, J.L., Marques, J.F., Alves, J., Gamito, R., Fonseca, V.F., Gonalves, C.I., Cabral, H.N., Costa, M.J., 2012. Is parasitism in fish a good metric to assess ecological water quality in transitional waters? What can be learned from two estuarine resident species? Ecol. Indic. 19, 154–160. https://doi.org/10.1016/j.ecolind.2011.08.025

Caador, I., Costa, J.L., Duarte, B., Silva, G., Medeiros, J.P., Azeda, C., Castro, N., Freitas, J., Pedro, S., Almeida, P.R., Cabral, H., Costa, M.J., 2012. Macroinvertebrates and fishes as biomonitors of heavy metal concentration in the Seixal Bay (Tagus estuary): Which species perform better? Ecol. Indic. 19, 184–190. https://doi.org/10.1016/j.ecolind.2011.09.007

Cabral, H.N., Fonseca, V.F., Gamito, R., Gonalves, C.I., Costa, J.L., Erzini, K., Gonalves, J., Martins, J., Leite, L., Andrade, J.P., Ramos, S., Bordalo, A., Amorim, E., Neto, J.M., Marques, J.C., Rebelo, J.E., Silva, C., Castro, N., Almeida, P.R., Domingos, I., Gordo, L.S., Costa, M.J., 2012. Ecological quality assessment of transitional waters based on fish assemblages in Portuguese estuaries: The Estuarine Fish Assessment Index (EFAI). Ecol. Indic. 19, 144–153. https://doi.org/10.1016/j.ecolind.2011.08.005

França, S., Vasconcelos, R.P., Fonseca, V.F., Tanner, S.E., Reis-Santos, P., Costa, M.J., Cabral, H.N., 2012. Predicting fish community properties within estuaries: Influence of habitat type and other environmental features. Estuar. Coast. Shelf Sci. 107, 22–31. https://doi.org/10.1016/j.ecss.2012.04.013

França, S., Vasconcelos, R.P., Reis-Santos, P., Fonseca, V.F., Costa, M.J., Cabral, H.N., 2012. Vulnerability of Portuguese estuarine habitats to human impacts and relationship with structural and functional properties of the fish community. Ecol. Indic. 18, 11–19. https://doi.org/10.1016/j.ecolind.2011.10.014

Marques, J.F., Fonseca, V.F., Shao, Z., Cabral, H.N., Tougard, C., Berrebi, P., 2012. Genetic diversity of Pomatoschistus microps (Perciformes: Gobiidae) in ecologically differentiated estuarine systems. Folia Zool. 61, 106–117. https://doi.org/10.25225/fozo.v61.i2.a3.2012

Cagador, I., Duarte, B., 2011. Salt marshes: An interesting ecosystem to study phytoremediation, Handbook of Phytoremediation.

Duarte, B., Freitas, J., Caçador, I., 2011. The role of organic acids in assisted phytoremediation processes of salt marsh sediments. Hydrobiologia 674, 169–177. https://doi.org/10.1007/s10750-011-0731-3

Fonseca, V.F., França, S., Vasconcelos, R.P., Serafim, A., Company, R., Lopes, B., Bebianno, M.J., Cabral, H.N., 2011. Short-term variability of multiple biomarker response in fish from estuaries: Influence of environmental dynamics. Mar. Environ. Res. 72, 172–178. https://doi.org/10.1016/j.marenvres.2011.08.001

Fonseca, V.F., França, S., Serafim, A., Company, R., Lopes, B., Bebianno, M.J., Cabral, H.N., 2011. Multi-biomarker responses to estuarine habitat contamination in three fish species: Dicentrarchus labrax, Solea senegalensis and Pomatoschistus microps. Aquat. Toxicol. 102, 216–227. https://doi.org/10.1016/j.aquatox.2011.01.018

 

Duarte, B., Caçador, I., 2010. The role of salt marsh plants and microorganisms in sediment metal biogeochemistry, Handbook of Environmental Research.

Fonseca, V.F., Neill, W.H., Miller, J.M., Cabral, H.N., 2010. Ecophys.Fish perspectives on growth of juvenile soles, Solea solea and Solea senegalensis, in the Tagus estuary, Portugal. J. Sea Res. 64, 118–124. https://doi.org/10.1016/j.seares.2009.10.007

Vasconcelos, R.P., Reis-Santos, P., Maia, A., Fonseca, V., França, S., Wouters, N., Costa, M.J., Cabral, H.N., 2010. Nursery use patterns of commercially important marine fish species in estuarine systems along the Portuguese coast. Estuar. Coast. Shelf Sci. 86, 613–624. https://doi.org/10.1016/j.ecss.2009.11.029

Duarte, B., Caetano, M., Almeida, P.R., Vale, C., Caçador, I., 2010. Accumulation and biological cycling of heavy metal in four salt marsh species, from Tagus estuary (Portugal). Environ. Pollut. 158, 1661–1668. https://doi.org/10.1016/j.envpol.2009.12.004

Duarte, B., Almeida, P.R., Caçador, I., 2009. Spartina maritima (cordgrass) rhizosediment extracellular enzymatic activity and its role in organic matter decomposition processes and metal speciation. Mar. Ecol. 30, 65–73. https://doi.org/10.1111/j.1439-0485.2009.00326.x

Tanner, S.E., Fonseca, V.F., Cabral, H.N., 2009. Condition of 0-group and adult pouting, Trisopterus luscus L., along the Portuguese coast: Evidence of habitat quality and latitudinal trends. J. Appl. Ichthyol. 25, 387–393. https://doi.org/10.1111/j.1439-0426.2009.01262.x

Fonseca, V., Serafim, A., Company, R., Bebianno, M.J., Cabral, H., 2009. Effect of copper exposure on growth, condition indices and biomarker response in juvenile sole Solea senegalensis. Sci. Mar. 73, 51–58. https://doi.org/10.3989/scimar.2009.73n1051

Vasconcelos, R.P., Reis-Santos, P., Fonseca, V., Ruano, M., Tanner, S., Costa, M.J., Cabral, H.N., 2009. Juvenile fish condition in estuarine nurseries along the Portuguese coast. Estuar. Coast. Shelf Sci. 82, 128–138. https://doi.org/10.1016/j.ecss.2009.01.002

Caçador, I., Caetano, M., Duarte, B., Vale, C., 2009. Stock and losses of trace metals from salt marsh plants. Mar. Environ. Res. 67, 75–82. https://doi.org/10.1016/j.marenvres.2008.11.004

Duarte, B., Reboreda, R., Caçador, I., 2008. Seasonal variation of extracellular enzymatic activity (EEA) and its influence on metal speciation in a polluted salt marsh. Chemosphere 73, 1056–1063. https://doi.org/10.1016/j.chemosphere.2008.07.072

Vinagre, C., Fonseca, V., Maia, A., Amara, R., Cabral, H., 2008. Habitat specific growth rates and condition indices for the sympatric soles Solea solea (Linnaeus, 1758) and Solea senegalensis Kaup 1858, in the Tagus estuary, Portugal, based on otolith daily increments and RNA-DNA ratio. J. Appl. Ichthyol. 24, 163–169. https://doi.org/10.1111/j.1439-0426.2007.01048.x

Vasconcelos, R.P., Reis-Santos, P., Tanner, S., Fonseca, V., Latkoczy, C., Günther, D., Costa, M.J., Cabral, H., 2007. Discriminating estuarine nurseries for five fish species through otolith elemental fingerprints. Mar. Ecol. Prog. Ser. 350, 117–126. https://doi.org/10.3354/meps07109

Fonseca, V.F., Cabral, H.N., 2007. Are fish early growth and condition patterns related to life-history strategies? Rev. Fish Biol. Fish. 17, 545–564. https://doi.org/10.1007/s11160-007-9054-x

Duarte, B., Delgado, M., Caçador, I., 2007. The role of citric acid in cadmium and nickel uptake and translocation, in Halimione portulacoides. Chemosphere 69, 836–840. https://doi.org/10.1016/j.chemosphere.2007.05.007

Vasconcelos, R.P., Reis-Santos, P., Fonseca, V., Maia, A., Ruano, M., França, S., Vinagre, C., Costa, M.J., Cabral, H., 2007. Assessing anthropogenic pressures on estuarine fish nurseries along the Portuguese coast: A multi-metric index and conceptual approach. Sci. Total Environ. 374, 199–215. https://doi.org/10.1016/j.scitotenv.2006.12.048

Cabral, H.N., Vasconcelos, R., Vinagre, C., França, S., Fonseca, V., Maia, A., Reis-Santos, P., Lopes, M., Ruano, M., Campos, J., Freitas, V., Santos, P.T., Costa, M.J., 2007. Relative importance of estuarine flatfish nurseries along the Portuguese coast. J. Sea Res. 57, 209–217. https://doi.org/10.1016/j.seares.2006.08.007

Vinagre, C., Fonseca, V., Cabral, H., Costa, M.J., 2006. Habitat suitability index models for the juvenile soles, Solea solea and Solea senegalensis, in the Tagus estuary: Defining variables for species management. Fish. Res. 82, 140–149. https://doi.org/10.1016/j.fishres.2006.07.011

Fonseca, V.F., Vinagre, C., Cabral, H.N., 2006. Growth variability of juvenile soles Solea solea and Solea senegalensis, and comparison with RNA:DNA ratios in the Tagus estuary, Portugal. J. Fish Biol. 68, 1551–1562. https://doi.org/10.1111/j.0022-1112.2006.001042.x